STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ76693.1Na+/melibiose symporter. (429 aa)    
Predicted Functional Partners:
SDZ76747.1
Hypothetical protein.
 
  
 0.946
SDZ76766.1
Predicted NAD/FAD-binding protein.
 
   
 0.867
SDZ82727.1
anti-ECFsigma factor, ChrR.
 
   
 0.630
SDZ76727.1
Cyclopropane-fatty-acyl-phospholipid synthase.
 
   
 0.623
SDZ82684.1
NADP-dependent 3-hydroxy acid dehydrogenase YdfG.
 
    0.565
SDZ76677.1
Cold-shock DNA-binding protein family.
     
 0.486
SDZ73321.1
Deoxyribodipyrimidine photolyase-related protein.
 
   
 0.467
SEA10608.1
Isoquinoline 1-oxidoreductase, beta subunit.
   
    0.465
SEA73588.1
Molybdopterin-binding domain of aldehyde dehydrogenase.
   
    0.465
SDZ76786.1
Deoxyribodipyrimidine photo-lyase type I; Belongs to the DNA photolyase family.
 
    0.461
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.