STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ77326.1Phytoene/squalene synthetase. (252 aa)    
Predicted Functional Partners:
SDZ74258.1
Phytoene desaturase.
  
 
 0.934
SEA44935.1
1-hydroxycarotenoid 3,4-desaturase.
  
 
 0.934
SEA18960.1
Octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.910
SDZ80045.1
Geranylgeranyl reductase.
  
 
 0.870
SEA89120.1
NADH dehydrogenase.
 
  
 0.870
SDZ74313.1
SAM-dependent methyltransferase, MidA family.
  
  
 0.868
SDZ93685.1
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
   
 
 0.856
SDZ74243.1
Phytoene synthase.
    
  0.849
SEA37734.1
Farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.847
SEA44964.1
Farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.847
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.