STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ80009.1Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily. (252 aa)    
Predicted Functional Partners:
SEA89442.1
N-terminal double-transmembrane domain-containing protein.
   
 0.923
SDZ74243.1
Phytoene synthase.
  
 0.817
SDZ77326.1
Phytoene/squalene synthetase.
  
 0.817
SDZ79994.1
Hypothetical protein.
       0.773
SDZ80030.1
Agmatinase; Belongs to the arginase family.
       0.773
SEB07801.1
Cytochrome P450.
  
 0.590
SEA93123.1
Diguanylate cyclase/phosphodiesterase.
   
    0.536
SEA31792.1
Salicylate hydroxylase.
   
 0.532
SEA68055.1
2-octaprenyl-6-methoxyphenol hydroxylase.
   
 0.532
SEA91870.1
2-octaprenyl-6-methoxyphenol hydroxylase.
   
 0.532
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.