STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ90619.1Hypothetical protein; Belongs to the UPF0753 family. (804 aa)    
Predicted Functional Partners:
SDZ90643.1
NADH-quinone oxidoreductase subunit L/NAD(P)H-quinone oxidoreductase subunit 5.
 
 0.995
SDZ90667.1
LysR family transcriptional regulator, transcriptional activator of nhaA; Belongs to the LysR transcriptional regulatory family.
 
     0.892
SEA14608.1
Carbonic anhydrase.
 
    0.632
SEA50868.1
Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
  
    0.580
SDZ73321.1
Deoxyribodipyrimidine photolyase-related protein.
  
     0.530
SEA21463.1
NADH dehydrogenase subunit L.
 
 
 0.530
SDZ87892.1
Multisubunit potassium/proton antiporter, PhaA subunit /multisubunit potassium/proton antiporter, PhaB subunit.
  
 
 0.525
SEA67127.1
Multisubunit sodium/proton antiporter, MrpA subunit.
  
 
 0.525
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.