STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ88269.1Cell Wall Hydrolase. (290 aa)    
Predicted Functional Partners:
SDZ88316.1
Pyruvate phosphate dikinase; Belongs to the PEP-utilizing enzyme family.
       0.685
SDZ77048.1
Protein of unknown function.
  
     0.520
glyS
glycyl-tRNA synthetase beta chain.
       0.509
SDZ96875.1
Protein of unknown function.
  
     0.490
SDZ88292.1
LAO/AO transport system kinase.
       0.456
SEA09049.1
Protein of unknown function.
  
     0.455
SEA67542.1
Dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives.
       0.452
SDZ77159.1
Uncharacterized protein, UPF0262 family; Belongs to the UPF0262 family.
  
     0.431
SDZ88387.1
Hypothetical protein.
       0.413
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.