STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ97190.1Aspartyl protease family protein. (193 aa)    
Predicted Functional Partners:
SDZ97221.1
ATP-binding cassette, subfamily F, member 3.
       0.778
SDZ97251.1
Acyl dehydratase.
       0.605
SDZ97280.1
MerR HTH family regulatory protein.
       0.605
ihfA
Integration host factor subunit alpha; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
       0.605
SEA23283.1
Phage portal protein, HK97 family.
  
    0.511
SEA22784.1
Protein of unknown function.
  
     0.496
SEA23313.1
Large terminase phage packaging protein.
  
     0.477
SDZ97161.1
Hypothetical protein.
       0.474
SEA32560.1
ATP synthase protein I; A possible function for this protein is to guide the assembly of the membrane sector of the ATPase enzyme complex.
  
     0.474
SEA22876.1
Phage conserved hypothetical protein BR0599.
  
     0.471
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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