STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ99684.1SnoaL-like domain-containing protein. (141 aa)    
Predicted Functional Partners:
SEA55661.1
Allantoin racemase.
 
     0.853
SDZ99707.1
NitT/TauT family transport system substrate-binding protein.
 
     0.769
SDZ99768.1
NitT/TauT family transport system ATP-binding protein.
 
     0.659
SDZ99738.1
NitT/TauT family transport system permease protein.
 
     0.634
SEA15163.1
Urate oxidase.
    
  0.613
SEA55601.1
Putative spermidine/putrescine transport system substrate-binding protein.
 
     0.565
SEA33143.1
Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family.
    
  0.558
SDZ90720.1
Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family.
    
  0.546
SEB04187.1
GAF domain-containing protein.
  
     0.535
SEB04161.1
Predicted arabinose efflux permease, MFS family.
  
     0.534
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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