STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA01521.1Peptide/nickel transport system permease protein. (337 aa)    
Predicted Functional Partners:
SEA01489.1
Peptide/nickel transport system permease protein.
 
  0.965
SEA01547.1
Peptide/nickel transport system substrate-binding protein.
 
  0.921
SEA01598.1
Peptide/nickel transport system ATP-binding protein/oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  0.854
SEB06005.1
Peptide/nickel transport system permease protein.
 
 0.853
SEB03927.1
Peptide/nickel transport system permease protein.
 
 
  0.829
SDZ96058.1
Peptide/nickel transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.827
SEA01570.1
Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  0.823
SEA35931.1
Peptide/nickel transport system permease protein.
 
 
  0.819
SDZ89992.1
Peptide/nickel transport system permease protein/dipeptide transport system permease protein.
 
 
  0.814
SEA82168.1
Peptide/nickel transport system permease protein.
 
 
  0.814
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.