STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ89304.1Hypothetical protein. (214 aa)    
Predicted Functional Partners:
SDZ89326.1
Type II secretion system protein D (GspD); Belongs to the bacterial secretin family.
       0.773
SDZ89122.1
Type II secretion system protein E (GspE).
       0.542
SDZ89147.1
Type II secretion system protein F (GspF).
       0.542
SDZ89167.1
General secretion pathway protein G.
       0.542
SDZ89191.1
General secretion pathway protein H.
       0.542
SDZ89213.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
       0.542
SDZ89240.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
       0.542
SDZ89262.1
General secretion pathway protein L.
       0.542
SDZ89283.1
Type II secretion system (T2SS), protein M subtype b.
       0.542
SDZ89094.1
Type 4 prepilin peptidase 1 Aspartic peptidase. MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
       0.405
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.