STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA12358.1Carbohydrate ABC transporter substrate-binding protein, CUT1 family. (442 aa)    
Predicted Functional Partners:
SEA12298.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 
  0.953
SEA12327.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
  0.949
SEA12389.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; Belongs to the ABC transporter superfamily.
 
  0.816
SEA80949.1
DNA-binding transcriptional regulator, LysR family.
  
     0.664
ugpE
Carbohydrate ABC transporter membrane protein 2, CUT1 family; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
  
  0.653
SEA85507.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
  
  0.653
SEA58373.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
  
  0.644
SEA58357.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
  
  0.628
SEA54947.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
  
  0.616
SEA32308.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
   
  0.595
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.