STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA16590.13-phytase/alkaline phosphatase D. (424 aa)    
Predicted Functional Partners:
SEA61045.1
VPLPA-CTERM protein sorting domain-containing protein.
 
     0.929
SEA30403.1
VPLPA-CTERM protein sorting domain-containing protein.
 
      0.847
SDZ96402.1
Selenocysteine lyase/Cysteine desulfurase.
    
   0.830
SEA22369.1
Selenocysteine lyase/Cysteine desulfurase.
    
   0.830
SEA45563.1
Cysteine desulfurase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
    
   0.830
SEA76339.1
Selenocysteine lyase/Cysteine desulfurase.
    
   0.830
SEA51901.1
Glycerophosphoryl diester phosphodiesterase.
     0.822
SEB06628.1
Hypothetical protein.
  
  
  0.733
SDZ75535.1
Hypothetical glycoside hydrolase 5.
  
 
 0.715
SEA16701.1
4-alpha-glucanotransferase.
    
 0.655
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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