STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA17885.1PIN domain-containing protein. (174 aa)    
Predicted Functional Partners:
SEA17916.1
SAM-dependent methyltransferase.
 
     0.879
SEA76580.1
Hypothetical protein.
  
     0.702
SEA44836.1
Hypothetical protein.
  
     0.674
SEA93006.1
Exodeoxyribonuclease-5.
  
     0.647
SEA53339.1
Hypothetical protein.
  
     0.645
SEA30555.1
Protein of unknown function.
  
     0.561
SEA54681.1
Hypothetical protein.
  
     0.558
SEA08542.1
Hypothetical protein.
  
     0.536
SDZ73001.1
Hypothetical protein.
  
     0.535
SEA17938.1
Signal transduction histidine kinase.
       0.528
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.