STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA08242.1Hypothetical protein. (385 aa)    
Predicted Functional Partners:
SEA23313.1
Large terminase phage packaging protein.
 
     0.739
SEA08270.1
Hypothetical protein.
     
 0.733
SEA23283.1
Phage portal protein, HK97 family.
  
    0.710
SEA76580.1
Hypothetical protein.
  
     0.695
SEA22935.1
Hypothetical protein.
  
    0.688
SEA22784.1
Protein of unknown function.
  
     0.683
SEA23188.1
Phage major capsid protein, HK97 family.
  
  
 0.680
SEA22876.1
Phage conserved hypothetical protein BR0599.
  
     0.674
SEA23045.1
Phage major tail protein, TP901-1 family.
  
     0.668
SEA23219.1
Hypothetical protein.
  
     0.659
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.