STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA10096.1Cyd operon protein YbgT. (46 aa)    
Predicted Functional Partners:
SEA10151.1
Cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein.
 
 
 0.976
SEA10122.1
Cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein.
 
 
 0.961
SEA30450.1
Cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein.
  
 
 0.924
SEA30476.1
Cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein.
  
 
 0.860
SEA10206.1
ATP-binding cassette, subfamily C, CydD.
 
  
 0.847
SEA10181.1
ATP-binding cassette, subfamily C, CydC.
 
  
 0.845
SEA10040.1
Hypothetical protein.
 
     0.707
SEA09960.1
Hypothetical protein.
 
     0.504
SDZ77878.1
Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
     
  0.499
SDZ77899.1
Succinate dehydrogenase subunit A; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
     
  0.499
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.