STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA29532.1Hypothetical protein. (262 aa)    
Predicted Functional Partners:
lysS
lysyl-tRNA synthetase, class I; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.790
SEA89098.1
Hypothetical protein.
  
   
 0.782
SEA67651.1
Predicted lipid-binding transport protein, Tim44 family.
  
     0.762
SDZ73155.1
Uncharacterized conserved protein, UPF0335 family.
  
   
 0.760
recO
DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.752
SDZ73116.1
Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.
   
    0.728
SEA29500.1
Ribonuclease T2; Belongs to the RNase T2 family.
       0.726
SEA42774.1
Transcriptional regulator, XRE family.
  
     0.711
SEA79280.1
ATP-dependent helicase/nuclease subunit B.
  
     0.703
atpF
F-type H+-transporting ATPase subunit b; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
     0.697
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.