STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA33662.1B12 binding domain-containing protein. (279 aa)    
Predicted Functional Partners:
SEA36441.1
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.
   
 0.963
SEA46800.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
 
 0.932
SEA33632.1
Transcriptional regulator PpsR.
 
   
 0.928
SEA45008.1
3-hydroxyethyl bacteriochlorophyllide a dehydrogenase.
 
 
 0.862
SEA33684.1
3-vinyl bacteriochlorophyllide hydratase.
 
  
 0.844
SEA45205.1
Photosynthetic reaction center M subunit; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.
  
   
 0.809
SEA45126.1
Light-harvesting complex 1 beta chain; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
  
   
 0.808
SEA45158.1
Antenna complex alpha/beta subunit; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
  
   
 0.808
SDZ80079.1
Chlorophyll synthase.
 
  
 0.806
bchN
Ferredoxin protochlorophyllide reductase subunit N; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein (BchN-BchB) is the catalytic component of the complex.
 
    0.806
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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