STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA36918.1Gas vesicle synthesis protein GvpL/GvpF. (293 aa)    
Predicted Functional Partners:
SEA36825.1
Gas vesicle protein K.
 
     0.953
SEA37042.1
Gas vesicle synthesis protein GvpL/GvpF.
 
     0.945
SEA36996.1
Gas vesicle protein G.
 
     0.944
SEA37096.1
Gas vesicle protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.
 
     0.943
SEA37195.1
Gas vesicle protein GvpN.
 
     0.934
SEA36967.1
Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.
 
     0.919
SEA37387.1
Gas vesicle protein.
 
     0.804
SEA36893.1
Gas vesicle protein.
       0.792
SEA36859.1
Gas vesicle synthesis protein GvpL/GvpF.
       0.773
SEA37070.1
Hypothetical protein.
       0.742
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.