STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA31762.1Protein of unknown function. (103 aa)    
Predicted Functional Partners:
SDZ88812.1
BON domain-containing protein.
  
   0.968
SEA74212.1
LysM domain-containing protein.
  
   0.968
SEA99457.1
Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family.
  
  
 0.622
SEA31792.1
Salicylate hydroxylase.
       0.545
SEA11074.1
Osmotically inducible protein OsmC.
   
    0.517
SEA11750.1
Glucosyl-glycerol phosphate synthase.
   
    0.508
SDZ78131.1
Hypothetical protein.
   
    0.474
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.