STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA45503.13-hydroxyisobutyrate dehydrogenase/2-hydroxy-3-oxopropionate reductase. (287 aa)    
Predicted Functional Partners:
SDZ78027.1
Methylmalonate-semialdehyde dehydrogenase [acylating].
  
 
  0.643
SDZ80612.1
3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.
  
  
 
0.625
SEA38440.1
3-hydroxyacyl-CoA dehydrogenase.
   
 
 0.583
SEA45524.1
Penicillin amidase.
       0.571
SEA36013.1
FAD/FMN-containing dehydrogenase.
    
  0.550
SEA46630.1
Citrate synthase; Belongs to the citrate synthase family.
  
 
  0.530
SEB00479.1
3-hydroxyacyl-CoA dehydrogenase.
   
 
 0.520
SEA45480.1
Hypothetical protein.
       0.516
SEA13420.1
Alkylhydroperoxidase AhpD family core domain-containing protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
  
 
  0.492
SDZ75080.1
3-methylcrotonyl-CoA carboxylase alpha subunit.
   
 
  0.468
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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