STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA42942.1Hypothetical protein. (406 aa)    
Predicted Functional Partners:
SEA75524.1
Hypothetical protein.
  
     0.539
SEA42888.1
S-adenosylmethionine-diacylglycerol 3-amino-3-carboxypropyl transferase.
       0.532
SEA42916.1
S-adenosylmethionine-diacylgycerolhomoserine-N- methlytransferase.
       0.532
SDZ73690.1
CAAX protease self-immunity.
  
     0.496
SEA47622.1
Hypothetical protein.
  
     0.464
SEA09597.1
Phasin family protein.
  
     0.442
SEA11864.1
iron(III) transport system permease protein.
  
     0.430
SDZ80524.1
Uncharacterized conserved protein, DUF1499 family.
  
     0.407
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.