STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA47188.1Protein of unknown function. (123 aa)    
Predicted Functional Partners:
SDZ90382.1
Type IV / VI secretion system protein, DotU family.
 
     0.782
SDZ90356.1
ImcF-related N-terminal domain-containing protein.
 
    0.777
SDZ90411.1
Type VI secretion system protein ImpJ.
 
     0.722
SDZ90322.1
Type VI secretion system protein ImpL/type VI secretion system protein ImpA.
 
   
 0.613
SDZ90127.1
Type VI secretion system secreted protein VgrG.
 
   
 0.598
SEA47166.1
FHA domain protein.
       0.495
SDZ90196.1
Type VI secretion system protein ImpG.
 
     0.473
SDZ90252.1
Type VI secretion system secreted protein Hcp.
 
     0.465
SDZ90103.1
Hypothetical protein.
 
     0.427
SDZ90173.1
Type VI secretion system protein ImpH.
 
    0.419
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.