STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA54659.1Hypothetical protein. (148 aa)    
Predicted Functional Partners:
SDZ76348.1
Putative phosphoesterase.
  
     0.681
SEA10520.1
Protein ImuB.
  
     0.589
SEA54634.1
Predicted N-formylglutamate amidohydrolase.
       0.561
SDZ76367.1
ATP-dependent helicase Lhr and Lhr-like helicase.
  
     0.552
SDZ96875.1
Protein of unknown function.
  
     0.548
SEA97498.1
Hypothetical protein.
  
     0.474
SEA53423.1
Uncharacterized conserved protein, DUF983 family.
  
     0.468
SDZ73251.1
Protein of unknown function.
  
     0.414
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.