STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA55143.1Sugar (pentulose or hexulose) kinase. (422 aa)    
Predicted Functional Partners:
SEA55021.1
Erythritol kinase (L-erythritol 4-phosphate-forming); Belongs to the FGGY kinase family.
     0.951
SEA55120.1
Rhamnose utilisation protein RhaD, predicted bifunctional aldolase and dehydrogenase.
 
  
 0.922
SEA55050.1
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
    0.887
SEA55075.1
L-fuculose-phosphate aldolase.
 
 
 0.880
SEA54947.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 
    0.850
SEA55167.1
HAD-superfamily class IIA hydrolase, TIGR01459.
 
 
 0.840
SEA54906.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
 
     0.832
SEA54878.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
 
     0.825
SEA55097.1
L-erythritol 4-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
  
  
 0.811
SEA54995.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; Belongs to the ABC transporter superfamily.
 
     0.808
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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