STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA55580.1Putative spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (327 aa)    
Predicted Functional Partners:
SEA55601.1
Putative spermidine/putrescine transport system substrate-binding protein.
 
 
  0.956
SEA55619.1
Putative spermidine/putrescine transport system permease protein.
  0.919
SEA55638.1
Putative spermidine/putrescine transport system permease protein.
 
 
  0.914
SEB02647.1
Molybdate transport system permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
 
  0.911
SEA34549.1
Peptide/nickel transport system ATP-binding protein.
 
     
0.843
SDZ93601.1
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; Belongs to the ABC transporter superfamily.
  
  
 
0.678
SDZ90916.1
Putative spermidine/putrescine transport system permease protein.
 
 
  0.644
SEA55559.1
Transcriptional regulator, GntR family.
 
     0.635
SEB02569.1
Putative spermidine/putrescine transport system permease protein.
 
  0.632
SDZ90940.1
Putative spermidine/putrescine transport system permease protein.
  
  0.620
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.