STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA51920.1ABC transporter transmembrane region. (317 aa)    
Predicted Functional Partners:
SEA21048.1
Acyl transferase domain-containing protein.
  
 0.897
SEA67844.1
Glycosyltransferase involved in cell wall bisynthesis.
  
  0.786
SEA67867.1
Glycosyltransferase involved in cell wall bisynthesis.
  
  0.784
SEA10741.1
Peptide/nickel transport system substrate-binding protein.
  
  
  0.776
SEA67885.1
Predicted glycosyl transferase.
 
     0.776
SEA67801.1
Predicted glycosyl transferase.
 
     0.775
SEA10688.1
Peptide/nickel transport system permease protein.
  
  
  0.723
SEA74192.1
ATP-binding cassette, subfamily B.
 
  
 0.715
SEA10717.1
Peptide/nickel transport system permease protein.
  
  
  0.708
SEA67901.1
Small-conductance mechanosensitive channel.
  
     0.703
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.