STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA61275.1ABC-type uncharacterized transport system, permease and ATPase components. (647 aa)    
Predicted Functional Partners:
SEA61377.1
Hypothetical protein.
 
     0.898
recA
Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
    
   0.891
SEA36967.1
Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.
  
  
 0.828
SEA61355.1
Beta-glucosidase.
 
     0.802
SEA61399.1
Glucoamylase.
 
     0.791
SDZ78419.1
Protease FtsH subunit HflC; HflC and HflK could regulate a protease.
    
  0.638
SDZ78439.1
Protease FtsH subunit HflK; HflC and HflK could encode or regulate a protease.
    
  0.638
SEA60755.1
SPFH domain, Band 7 family protein.
    
  0.638
SDZ93208.1
Hypothetical protein.
  
     0.609
SEA35454.1
Tungstate transport system permease protein.
    
  0.494
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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