STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA59780.1Uncharacterized membrane protein YtjA, UPF0391 family. (58 aa)    
Predicted Functional Partners:
SEA59601.1
Uncharacterized conserved protein YjbJ, UPF0337 family; Belongs to the UPF0337 (CsbD) family.
 
    0.861
SDZ89509.1
Osmotically-inducible protein OsmY, contains BON domain.
  
    0.785
SEA59758.1
Uncharacterized conserved protein.
       0.566
SEA59730.1
Two-component sensor histidine kinase, contains HisKA and HATPase domains.
 
     0.564
SEA45461.1
Lipid-binding SYLF domain-containing protein.
   
    0.530
SEA59657.1
Response regulator receiver domain-containing protein.
 
     0.517
SEA59710.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.475
SEA59630.1
Predicted PurR-regulated permease PerM.
 
     0.422
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.