Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDZ94171.1 | SDZ98594.1 | SAMN05444370_102267 | SAMN05444370_102420 | ATP-dependent DNA helicase RecQ. | Cytochrome P450. | 0.559 |
SDZ94171.1 | SEA59873.1 | SAMN05444370_102267 | SAMN05444370_10779 | ATP-dependent DNA helicase RecQ. | DNA repair exonuclease SbcCD nuclease subunit. | 0.992 |
SDZ94171.1 | SEA59900.1 | SAMN05444370_102267 | SAMN05444370_10780 | ATP-dependent DNA helicase RecQ. | DNA repair exonuclease SbcCD ATPase subunit. | 0.983 |
SDZ94171.1 | SEA88115.1 | SAMN05444370_102267 | SAMN05444370_11588 | ATP-dependent DNA helicase RecQ. | Hypothetical protein. | 0.788 |
SDZ94171.1 | polA | SAMN05444370_102267 | SAMN05444370_103561 | ATP-dependent DNA helicase RecQ. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.996 |
SDZ94171.1 | recA | SAMN05444370_102267 | SAMN05444370_102367 | ATP-dependent DNA helicase RecQ. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.991 |
SDZ94171.1 | topA | SAMN05444370_102267 | SAMN05444370_102313 | ATP-dependent DNA helicase RecQ. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.994 |
SDZ98594.1 | SDZ94171.1 | SAMN05444370_102420 | SAMN05444370_102267 | Cytochrome P450. | ATP-dependent DNA helicase RecQ. | 0.559 |
SDZ98594.1 | SEA11955.1 | SAMN05444370_102420 | SAMN05444370_103136 | Cytochrome P450. | DNA ligase-1. | 0.475 |
SDZ98594.1 | SEA59873.1 | SAMN05444370_102420 | SAMN05444370_10779 | Cytochrome P450. | DNA repair exonuclease SbcCD nuclease subunit. | 0.758 |
SDZ98594.1 | SEA59900.1 | SAMN05444370_102420 | SAMN05444370_10780 | Cytochrome P450. | DNA repair exonuclease SbcCD ATPase subunit. | 0.755 |
SDZ98594.1 | polA | SAMN05444370_102420 | SAMN05444370_103561 | Cytochrome P450. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.881 |
SDZ98594.1 | recA | SAMN05444370_102420 | SAMN05444370_102367 | Cytochrome P450. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.452 |
SEA11955.1 | SDZ98594.1 | SAMN05444370_103136 | SAMN05444370_102420 | DNA ligase-1. | Cytochrome P450. | 0.475 |
SEA11955.1 | SEA59873.1 | SAMN05444370_103136 | SAMN05444370_10779 | DNA ligase-1. | DNA repair exonuclease SbcCD nuclease subunit. | 0.854 |
SEA11955.1 | SEA59900.1 | SAMN05444370_103136 | SAMN05444370_10780 | DNA ligase-1. | DNA repair exonuclease SbcCD ATPase subunit. | 0.858 |
SEA11955.1 | SEA77014.1 | SAMN05444370_103136 | SAMN05444370_11178 | DNA ligase-1. | Putative mRNA 3-end processing factor. | 0.994 |
SEA11955.1 | SEA88115.1 | SAMN05444370_103136 | SAMN05444370_11588 | DNA ligase-1. | Hypothetical protein. | 0.885 |
SEA11955.1 | polA | SAMN05444370_103136 | SAMN05444370_103561 | DNA ligase-1. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.993 |
SEA11955.1 | recA | SAMN05444370_103136 | SAMN05444370_102367 | DNA ligase-1. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.401 |
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