STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA60424.1Hypothetical protein. (152 aa)    
Predicted Functional Partners:
SEA60448.1
Pilus assembly protein CpaC; Belongs to the bacterial secretin family.
       0.773
SEA60471.1
Pilus assembly protein CpaB.
       0.773
SEA60491.1
Prepilin peptidase CpaA.
       0.773
SEA60324.1
Type II secretion system protein F (GspF).
       0.675
SEA60350.1
Flp pilus assembly protein TadB.
       0.675
SEA60378.1
Pilus assembly protein CpaF.
       0.675
SEA60401.1
Pilus assembly protein CpaE.
       0.675
SEA60513.1
Hypothetical protein.
       0.532
SEA60227.1
Hypothetical protein.
       0.525
SEA60253.1
Flp pilus assembly protein TadD, contains TPR repeats.
       0.525
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.