STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA64228.1Uncharacterized protein involved in exopolysaccharide biosynthesis. (535 aa)    
Predicted Functional Partners:
SEA64185.1
Polysaccharide export outer membrane protein.
 
 0.994
SEA64209.1
Chromosome partitioning ATPase, Mrp family, contains Fe-S cluster.
 
 
 0.979
SDZ76660.1
Undecaprenyl-phosphate glucose phosphotransferase.
  
 
 0.977
SEA63840.1
Undecaprenyl-phosphate glucose phosphotransferase.
  
 
 0.977
SEA65460.1
Polysaccharide export outer membrane protein.
  
 0.963
SEA64252.1
Type II secretory pathway, component ExeA (predicted ATPase).
 
     0.959
SEA64728.1
Mannose-1-phosphate guanylyltransferase/mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.933
SEA64271.1
Exosortase D, VPLPA-CTERM-specific.
 
     0.891
SEA63772.1
Uncharacterized conserved protein HemY, contains two TPR repeats.
 
     0.828
SEA63898.1
Membrane protein involved in the export of O-antigen and teichoic acid.
 
  
 0.818
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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