STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA64752.1Plasmid replication initiator protein. (355 aa)    
Predicted Functional Partners:
SEA87219.1
Methyltransferase small domain-containing protein.
  
     0.701
SEA87788.1
Protein of unknown function.
  
     0.686
SEB01029.1
Protein of unknown function.
  
     0.684
SEA85374.1
Methyltransferase small domain-containing protein.
  
     0.671
SEA87588.1
Chromosome partitioning protein, ParB family; Belongs to the ParB family.
  
     0.646
SDZ73417.1
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase.
  
     0.628
SEA87488.1
Hypothetical protein.
  
     0.626
SEA87660.1
Chromosome partitioning protein.
 
     0.621
SEA64773.1
Replication protein C C-terminal region.
 
     0.607
SEB02262.1
Chromosome partitioning protein.
 
     0.607
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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