STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA67102.1DNA-binding transcriptional regulator, MarR family. (165 aa)    
Predicted Functional Partners:
SEA67053.1
GNAT-family acetyltransferase TIGR03103.
 
   
 0.645
SEA67075.1
Asparagine synthase (glutamine-hydrolysing).
       0.575
SEA67030.1
Hydrolase, peptidase M42 family.
  
    0.527
SEA71540.1
Cytochrome c.
   
 
  0.519
SEA67127.1
Multisubunit sodium/proton antiporter, MrpA subunit.
       0.486
SEA67150.1
Multisubunit sodium/proton antiporter, MrpB subunit.
       0.486
SEA67172.1
Multisubunit sodium/proton antiporter, MrpC subunit.
       0.486
SEA67199.1
Multisubunit sodium/proton antiporter, MrpD subunit.
       0.486
SEA67224.1
Multicomponent Na+:H+ antiporter subunit E.
       0.460
SEA67250.1
Multisubunit sodium/proton antiporter, MrpF subunit.
       0.460
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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