STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA68736.1Tripartite ATP-independent transporter solute receptor, DctP family. (321 aa)    
Predicted Functional Partners:
SEA68688.1
TRAP transporter, DctM subunit.
    0.953
SEA36079.1
TRAP transporter, DctM subunit.
 
    0.837
SDZ73180.1
TRAP transporter, DctM subunit.
 
    0.828
SEA33482.1
TRAP transporter, DctM subunit.
 
    0.819
SEA92136.1
TRAP transporter, DctM subunit.
 
    0.815
SEB03482.1
TRAP transporter, DctM subunit.
 
    0.803
SEA18310.1
TRAP transporter, DctM subunit.
 
    0.800
SEA68714.1
TRAP-type C4-dicarboxylate transport system, small permease component.
  
    0.799
SEA60079.1
C4-dicarboxylate transporter, DctM subunit.
 
    0.764
SEA68761.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
     0.733
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.