STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA68761.1NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family. (250 aa)    
Predicted Functional Partners:
SEA68780.1
Transketolase subunit B.
 
     0.912
SEA68803.1
Transketolase subunit A.
 
     0.908
SEA21048.1
Acyl transferase domain-containing protein.
  
 0.794
SEA68736.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
     0.733
SEA89193.1
Glutamate synthase (NADPH) large subunit.
     
 0.731
SEA68688.1
TRAP transporter, DctM subunit.
 
  
  0.719
SEA51388.1
Propane monooxygenase reductase subunit.
 
 0.665
SEA68714.1
TRAP-type C4-dicarboxylate transport system, small permease component.
       0.651
SEA91835.1
Hypothetical protein.
    
  0.567
SEA99780.1
Putative ABC transport system ATP-binding protein.
    
  0.567
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
Server load: low (26%) [HD]