SEA73566.1 protein (Rubrimonas cliftonensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SEA73566.1

Molybdopterin-binding domain of aldehyde dehydrogenase. (256 aa)

Predicted Functional Partners:

SEA73588.1

0.992

SEA73548.1

0.967

SEA10632.1

0.870

SDZ74803.1

0.762

SEA73607.1

0.759

SEA91797.1

0.758

SEA80779.1

0.735

SEA10608.1

0.715

SEA58640.1

0.697

SEA73526.1

0.643

Your Current Organism:

Rubrimonas cliftonensis

NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDZ74803.1	SEA10608.1	SAMN05444370_101145	SAMN05444370_10386	Carbon-monoxide dehydrogenase small subunit.	Isoquinoline 1-oxidoreductase, beta subunit.	0.704
SDZ74803.1	SEA73566.1	SAMN05444370_101145	SAMN05444370_110112	Carbon-monoxide dehydrogenase small subunit.	Molybdopterin-binding domain of aldehyde dehydrogenase.	0.762
SDZ74803.1	SEA73588.1	SAMN05444370_101145	SAMN05444370_110113	Carbon-monoxide dehydrogenase small subunit.	Molybdopterin-binding domain of aldehyde dehydrogenase.	0.733
SEA10608.1	SDZ74803.1	SAMN05444370_10386	SAMN05444370_101145	Isoquinoline 1-oxidoreductase, beta subunit.	Carbon-monoxide dehydrogenase small subunit.	0.704
SEA10608.1	SEA10632.1	SAMN05444370_10386	SAMN05444370_10387	Isoquinoline 1-oxidoreductase, beta subunit.	Isoquinoline 1-oxidoreductase, alpha subunit.	0.996
SEA10608.1	SEA58640.1	SAMN05444370_10386	SAMN05444370_10732	Isoquinoline 1-oxidoreductase, beta subunit.	Xanthine dehydrogenase YagT iron-sulfur-binding subunit.	0.765
SEA10608.1	SEA73548.1	SAMN05444370_10386	SAMN05444370_110111	Isoquinoline 1-oxidoreductase, beta subunit.	Nicotinate dehydrogenase subunit A.	0.962
SEA10608.1	SEA73566.1	SAMN05444370_10386	SAMN05444370_110112	Isoquinoline 1-oxidoreductase, beta subunit.	Molybdopterin-binding domain of aldehyde dehydrogenase.	0.715
SEA10608.1	SEA80779.1	SAMN05444370_10386	SAMN05444370_11283	Isoquinoline 1-oxidoreductase, beta subunit.	Carbon-monoxide dehydrogenase small subunit.	0.698
SEA10608.1	SEA91797.1	SAMN05444370_10386	SAMN05444370_11818	Isoquinoline 1-oxidoreductase, beta subunit.	Carbon monoxide dehydrogenase, small subunit.	0.802
SEA10632.1	SEA10608.1	SAMN05444370_10387	SAMN05444370_10386	Isoquinoline 1-oxidoreductase, alpha subunit.	Isoquinoline 1-oxidoreductase, beta subunit.	0.996
SEA10632.1	SEA73566.1	SAMN05444370_10387	SAMN05444370_110112	Isoquinoline 1-oxidoreductase, alpha subunit.	Molybdopterin-binding domain of aldehyde dehydrogenase.	0.870
SEA10632.1	SEA73588.1	SAMN05444370_10387	SAMN05444370_110113	Isoquinoline 1-oxidoreductase, alpha subunit.	Molybdopterin-binding domain of aldehyde dehydrogenase.	0.979
SEA58640.1	SEA10608.1	SAMN05444370_10732	SAMN05444370_10386	Xanthine dehydrogenase YagT iron-sulfur-binding subunit.	Isoquinoline 1-oxidoreductase, beta subunit.	0.765
SEA58640.1	SEA73566.1	SAMN05444370_10732	SAMN05444370_110112	Xanthine dehydrogenase YagT iron-sulfur-binding subunit.	Molybdopterin-binding domain of aldehyde dehydrogenase.	0.697
SEA58640.1	SEA73588.1	SAMN05444370_10732	SAMN05444370_110113	Xanthine dehydrogenase YagT iron-sulfur-binding subunit.	Molybdopterin-binding domain of aldehyde dehydrogenase.	0.806
SEA73526.1	SEA73548.1	SAMN05444370_110110	SAMN05444370_110111	Hypothetical protein.	Nicotinate dehydrogenase subunit A.	0.576
SEA73526.1	SEA73566.1	SAMN05444370_110110	SAMN05444370_110112	Hypothetical protein.	Molybdopterin-binding domain of aldehyde dehydrogenase.	0.643
SEA73526.1	SEA73588.1	SAMN05444370_110110	SAMN05444370_110113	Hypothetical protein.	Molybdopterin-binding domain of aldehyde dehydrogenase.	0.577
SEA73526.1	SEA73607.1	SAMN05444370_110110	SAMN05444370_110114	Hypothetical protein.	Molybdate transport system substrate-binding protein.	0.501