STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA77374.1Transcriptional regulator, contains XRE-family HTH domain. (130 aa)    
Predicted Functional Partners:
SEA50735.1
DNA polymerase III, chi subunit.
  
     0.710
recO
DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
    0.707
SEA29532.1
Hypothetical protein.
  
     0.688
metK
Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
 
  
  0.683
SEA89442.1
N-terminal double-transmembrane domain-containing protein.
  
     0.679
SEA89422.1
Hypothetical protein.
  
     0.651
SEA11294.1
Hypothetical protein.
  
     0.639
SEA72619.1
TIGR02302 family protein.
  
     0.616
SDZ77856.1
HAD-superfamily class IIA hydrolase, TIGR01459.
  
     0.613
nadE
NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.602
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.