STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA79215.1Two-component system, sensor histidine kinase RegB. (485 aa)    
Predicted Functional Partners:
SEA79171.1
Two-component system, response regulator RegA.
 0.993
SEA11923.1
Two-component system, cell cycle sensor histidine kinase PleC.
 
 0.991
SEA17938.1
Signal transduction histidine kinase.
 
 0.982
SEA22636.1
Pyruvate dehydrogenase E1 component beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
    
 0.976
SEA91690.1
PAS domain S-box-containing protein.
  
 0.967
SDZ91226.1
Signal transduction histidine kinase.
  
 0.953
SEA00938.1
PAS domain S-box-containing protein.
  
 0.953
SEB07381.1
Hypothetical protein.
  
 0.953
SEA76141.1
His Kinase A (phospho-acceptor) domain-containing protein.
   
 0.942
SEA59148.1
PAS domain S-box-containing protein.
  
 0.786
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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