STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA79457.1Anaerobic Mg-protoporphyrin IX monomethyl ester oxidative cyclase. (540 aa)    
Predicted Functional Partners:
SEA79434.1
Divinyl protochlorophyllide a 8-vinyl-reductase.
 
 
 0.999
SEA33815.1
Mg-protoporphyrin IX methyltransferase.
 
 
 0.946
SEA33684.1
3-vinyl bacteriochlorophyllide hydratase.
  
 
 0.912
acsF
Mg-protoporphyrin IX monomethyl ester (oxidative) cyclase; Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME); Belongs to the AcsF family.
     
 0.898
SDZ80079.1
Chlorophyll synthase.
 
 
 0.882
SDZ82534.1
Hypothetical protein.
   
    0.825
SDZ79418.1
Polyphosphate kinase.
   
    0.821
SDZ80931.1
Polyphosphate kinase 2, PA0141 family.
   
    0.821
SDZ80045.1
Geranylgeranyl reductase.
 
  
 0.773
SEA44746.1
Serine aminopeptidase, S33.
  
     0.761
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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