STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA80859.1TRAP transporter, DctM subunit. (442 aa)    
Predicted Functional Partners:
SEA80843.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
  
  0.994
SEA80820.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
 
  0.989
SEA80740.1
Transcriptional regulator, TetR family.
 
     0.825
SEA80801.1
Carbon-monoxide dehydrogenase large subunit.
 
     0.791
SEA21048.1
Acyl transferase domain-containing protein.
    
  0.702
SEA92117.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.687
SEA80762.1
Carbon-monoxide dehydrogenase medium subunit.
 
     0.651
SEA18258.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.613
SDZ99915.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
    0.532
SEA93297.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein.
  
     0.480
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.