STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA83463.1TRAP transporter, DctM subunit. (443 aa)    
Predicted Functional Partners:
SEA83434.1
Tat (twin-arginine translocation) pathway signal sequence.
 
 
  0.988
SEA83448.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 0.963
SEA83514.1
Threonine dehydrogenase.
 
  
  0.926
SEA83496.1
Gluconate 5-dehydrogenase.
 
  
  0.914
hisD-3
Sulfopropanediol 3-dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
 
     0.837
SEA83532.1
L-lactate dehydrogenase (cytochrome).
 
     0.820
SEA18258.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.809
SEA92117.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.787
SEA36034.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.758
SEA21048.1
Acyl transferase domain-containing protein.
    
  0.702
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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