STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA84727.1Protein of unknown function. (264 aa)    
Predicted Functional Partners:
SDZ88532.1
Molybdopterin molybdochelatase /molybdenum cofactor cytidylyltransferase.
  
     0.690
SEA84747.1
Acetoin utilization deacetylase AcuC.
  
    0.564
SEA12358.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
  
     0.536
SEA84764.1
Plasmid segregation oscillating ATPase ParF.
       0.533
SEA72619.1
TIGR02302 family protein.
  
     0.448
SDZ76403.1
acyl-CoA thioester hydrolase.
  
     0.440
SDZ79977.1
L-ascorbate metabolism protein UlaG, beta-lactamase superfamily.
  
    0.426
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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