STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA85076.1Nucleotide-binding universal stress protein, UspA family. (137 aa)    
Predicted Functional Partners:
SEA60777.1
Anaerobic selenocysteine-containing dehydrogenase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
    0.536
SDZ75240.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
  
     0.503
SEA85062.1
Hypothetical protein.
       0.497
SDZ78131.1
Hypothetical protein.
 
    0.493
SDZ75261.1
Xaa-Pro aminopeptidase.
  
     0.486
SEA43280.1
YrhK-like protein.
  
     0.478
SEA73627.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
     0.470
SEB03778.1
cation:H+ antiporter.
  
     0.441
SEA76761.1
Hypothetical protein; Belongs to the UPF0235 family.
  
     0.423
SEA22398.1
Betaine/carnitine transporter, BCCT family; Belongs to the BCCT transporter (TC 2.A.15) family.
 
     0.402
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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