STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA87313.1Hypothetical protein. (172 aa)    
Predicted Functional Partners:
SEA87330.1
Hypothetical protein.
      
0.773
SEA87349.1
Hypothetical protein.
       0.757
SEA87369.1
Hypothetical protein.
       0.557
SEA87238.1
Hypothetical protein.
       0.553
SEA87259.1
Hypothetical protein.
       0.553
SEA87273.1
Hypothetical protein.
       0.553
SEA87294.1
Hypothetical protein.
       0.553
SEA87387.1
Hypothetical protein.
       0.463
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.