STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA89098.1Hypothetical protein. (163 aa)    
Predicted Functional Partners:
SDZ73155.1
Uncharacterized conserved protein, UPF0335 family.
  
   
 0.786
SEA29532.1
Hypothetical protein.
  
   
 0.782
SDZ97462.1
Beta-barrel assembly machine subunit BamE.
  
   
 0.771
ftsQ
Cell division protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
  
     0.757
recO
DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.757
SEA61940.1
SH3-like domain-containing protein.
  
     0.727
SEA79280.1
ATP-dependent helicase/nuclease subunit B.
  
     0.723
SEA50735.1
DNA polymerase III, chi subunit.
  
     0.722
secE
Protein translocase subunit secE/sec61 gamma; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.721
SEA79299.1
DNA helicase/exodeoxyribonuclease V, subunit A; Belongs to the helicase family. UvrD subfamily.
  
     0.718
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.