STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA90421.1Biopolymer transport protein ExbB. (317 aa)    
Predicted Functional Partners:
SEA90404.1
Outer membrane transport energization protein ExbD.
 
 
 0.979
SEA90386.1
Outer membrane transport energization protein ExbD.
 
 
 0.978
SEA90372.1
TonB family C-terminal domain-containing protein.
 
 
 0.964
SEA73912.1
Biopolymer transport protein ExbD.
 
 
 0.900
SEA73935.1
Outer membrane transport energization protein ExbD.
 
 
 0.857
SEA90436.1
Hypothetical protein.
 
     0.855
SEA47273.1
Biopolymer transport protein ExbD.
 
 
 0.827
SEA47255.1
Biopolymer transport protein ExbD.
 
 
 0.817
SEA73954.1
Outer membrane transport energization protein TonB.
 
 
 0.802
SEA52817.1
Cell division and transport-associated protein TolR.
 
 
 0.761
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.