STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA90448.1Hypothetical protein. (361 aa)    
Predicted Functional Partners:
SEA90465.1
Hypothetical protein.
 
  
 0.982
SEA90477.1
CxxC motif-containing protein, DUF1111 family.
 
  
 0.976
SEA90493.1
Putative iron-regulated protein.
 
    0.968
SEA72938.1
Di-haem oxidoreductase, putative peroxidase.
 
  
 0.901
SEA90372.1
TonB family C-terminal domain-containing protein.
 
     0.728
SEA90436.1
Hypothetical protein.
       0.697
SEA90507.1
RNA polymerase sigma factor, sigma-70 family.
       0.693
SEA90386.1
Outer membrane transport energization protein ExbD.
       0.687
SEA90404.1
Outer membrane transport energization protein ExbD.
       0.687
SEA90421.1
Biopolymer transport protein ExbB.
       0.687
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.