STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA90894.1Imidazolonepropionase. (441 aa)    
Predicted Functional Partners:
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
 
 0.915
SEA90910.1
ABC-type nickel/cobalt efflux system, permease component RcnA.
       0.636
SEA90849.1
Hypothetical protein.
 
     0.601
SEA90878.1
Imidazolonepropionase.
 
    
0.573
SEA37414.1
Histidine ammonia-lyase.
  
  
 0.568
hutH
Histidine ammonia-lyase.
  
  
 0.568
SEA79345.1
Histidine ammonia-lyase.
  
  
 0.568
SDZ87773.1
N-formylglutamate deformylase.
  
  
 0.553
SEA58166.1
Formimidoylglutamate deiminase.
     
  0.542
SEA95676.1
Arylsulfatase.
  
     0.519
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.