STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA92031.1Glucose 1-dehydrogenase. (257 aa)    
Predicted Functional Partners:
SEA92001.1
L-idonate 5-dehydrogenase.
 
  0.898
SEA92101.1
Transcriptional regulator, LacI family.
 
   0.835
SEA21048.1
Acyl transferase domain-containing protein.
  
 0.794
SEA92048.1
Gluconate kinase, SKI family.
   
  0.793
SEA92065.1
2-hydroxy-3-oxopropionate reductase.
    
  0.777
SEA92082.1
Hypothetical protein.
       0.773
SEA89193.1
Glutamate synthase (NADPH) large subunit.
     
 0.731
SEA51388.1
Propane monooxygenase reductase subunit.
 
 0.617
SEA91835.1
Hypothetical protein.
    
  0.567
SEA99780.1
Putative ABC transport system ATP-binding protein.
    
  0.567
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.