STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA96535.1Amino acid ABC transporter substrate-binding protein, PAAT family. (273 aa)    
Predicted Functional Partners:
SEA96550.1
Cytochrome cL apoprotein; Electron acceptor for MDH. Acts in methanol oxidation.
 
  
 0.987
SEA96567.1
Methanol dehydrogenase (cytochrome) small subunit; Catalyzes the oxidation of primary alcohols including methanol.
 
  
  0.974
SEA96598.1
mxaA protein.
 
  
  0.968
SEA96622.1
mxaC protein.
 
  
  0.968
SEA96655.1
mxaL protein.
 
  
  0.968
SEA96632.1
mxaK protein.
 
  
  0.953
SEA96517.1
Methanol dehydrogenase (cytochrome) large subunit apoprotein.
 
 
 0.952
SEA96665.1
mxaD protein.
 
  
  0.902
SEA93643.1
PQQ-like domain-containing protein.
 
 
 0.887
SEA42536.1
Alcohol dehydrogenase (cytochrome c).
 
 
 0.879
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.