STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA97922.1Glyoxylase, beta-lactamase superfamily II. (316 aa)    
Predicted Functional Partners:
SEA97909.1
3-(3-hydroxy-phenyl)propionate hydroxylase.
    0.986
SEA97898.1
Protein of unknown function.
 
     0.938
SEA97946.1
Homogentisate 1,2-dioxygenase.
 
     0.931
SEA97931.1
Fumarylacetoacetate hydrolase.
 
    0.907
SEA97884.1
Maleylacetoacetate isomerase.
 
 
   0.880
SEA97955.1
DNA-binding transcriptional regulator, MarR family.
 
     0.859
SEA97875.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
     0.833
SEA97863.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.781
SEA97854.1
TRAP transporter, DctM subunit.
 
     0.758
SEA97842.1
Transcriptional regulator, MarR family.
 
     0.742
Your Current Organism:
Rubrimonas cliftonensis
NCBI taxonomy Id: 89524
Other names: CIP 105913, DSM 15345, JCM 10189, NBRC 100047, R. cliftonensis, strain OCh 317
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.